Uses of Class
woSource.math.Point3D

Packages that use Point3D

Package	Description
woSource
woSource.math

Uses of Point3D in woSource

Fields in woSource declared as Point3D

Modifier and Type	Field and Description
protected Point3D	DoseReader.doseImgTopLeft
protected Point3D	DoseReader.doseImgXdir
protected Point3D	DoseReader.doseImgYdir
protected Point3D	DoseReader.doseImgZdir

Methods in woSource that return Point3D

Modifier and Type	Method and Description
Point3D[][]	RegisterSnake.calc_dist_map(int prefsize, float pixelsize)
Point3D[]	InteractiveSnake.Snake.getSnake3DPts(boolean useOrigProps)
Point3D[]	SnakeReader.ReadASnakeFile(java.lang.String filename)
Point3D[]	DVHCalc.ReadASnakeFile(java.lang.String filename)

Methods in woSource with parameters of type Point3D

Modifier and Type	Method and Description
void	Point3Dviewer.addLandmark(Point3D newlmpt)
float	LIDCreview.candidateSep(Point3D A, NoduleCandidate B)
Rectangle3D	DoseReader.convDose2CTscannerCoords(java.util.Properties[] CTprops, Point3D imgTLFmm, Rectangle3D roi, float[] CTdepthCoords, float[] CTwidthCoords, float[] CTheightCoords) returns the shifts needed to align the dose field to the image set, and // sets doseDepths, widths, heights [mm] and other parameters read from dicom header // WO 10/12/2012 modified to use dose data as 3D dicom image.
void	Point3Dviewer.resetLandmark(int lmat, Point3D newlmpt)

Uses of Point3D in woSource.math

Fields in woSource.math declared as Point3D

Modifier and Type	Field and Description
Point3D	HeartLongAxis.apicalFocalPt
protected Point3D	HeartLongAxis.midSeptumPt
Point3D	HeartLongAxis.mitralValveFocalPt
protected Point3D	HeartLongAxis.ptAtLVapex
protected Point3D	HeartLongAxis.ptAtMVcentroid

Methods in woSource.math that return Point3D

Modifier and Type	Method and Description
Point3D	Polygon3D.centroid()
static Point3D[][]	ArraysI.extend(Point3D[][] A, int nextend1, int nextend2)
static Point3D[]	ArraysI.extend(Point3D[] A, int nextend)
static Point3D	ImgProc.findfastNMImax(short[][][] A, short[][][] B)
static Point3D	ImgProc.findfastNMImax(short[][][] A, short[][][] B, int az, int ax, int ay)
static Point3D	ImgProc.findNMImax(short[][][] A, short[][][] B, int az, int ax, int ay) find max NMI point, given the starting location (az,ax,ay) -- thus is doing a minor attempt at registration assume monotonic neighborhood
static Point3D	MathII.getDicomPoint3D(ij.ImagePlus imp, java.lang.String key)
static Point3D	MathII.getDicomPoint3D(ij.ImagePlus imp, java.lang.String key, int skip)
static Point3D[][][]	ImgProc.getImage3Dcoords(short[][][] img, java.util.Properties[] DicomHeaders)
static Point3D[][][]	ImgProc.getROI3Dcoords(short[][][] img, Rectangle3D rect, java.util.Properties[] DicomHeaders) get 3D mm coords and pixel value of each pixel within the ROI rectangle.
static Point3D	MathII.getStringPoint3D(java.lang.String target, java.lang.String key)
static Point3D	MathII.getStringPoint3D(java.lang.String target, java.lang.String key, int skip)
static Point3D	MathII.getStringPoint3D(java.lang.String target, java.lang.String key, int skip, java.lang.String strsep)
static Point3D	MathII.getStringPoint3D(java.lang.String target, java.lang.String key, java.lang.String strsep)
static Point3D[][][]	ImgProc.getTransformedImageCoords_mm(short[][][] img, java.util.Properties[] selfHeaders, Rectangle3D selfroi, float xshift, float yshift, float zshift, float drot, float wrot, float hrot, float dscale, float wscale, float hscale, java.util.Properties[] targetHeaders, Rectangle3D targetroi)
static Point3D[][][]	ImgProc.getTransformedImageCoords_mm(short[][][] img, java.util.Properties[] selfHeaders, Rectangle3D selfroi, ImageRegistration imgreg, java.util.Properties[] targetHeaders, Rectangle3D targetroi) get 3D mm transformed coords and pixel value of each pixel within the ROI rectangle, using the same code as above.
static Point3D[]	ArraysI.insert(Point3D[] A, Point3D newval, int loc)
static Point3D	ArraysI.maxpt(Point3D[] A)
static Point3D	ArraysI.maxpt(Point3D[] A, int x, int width)
static Point3D[]	ArraysI.read(Point3D[] A, java.lang.String label)
static Point3D[]	ArraysI.read(Point3D[] A, java.lang.String label, boolean ask)
static Point3D[]	ArraysI.remove(Point3D[] A, int loc)
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D newval)
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D[] B) WO 12/23/2010 merge 2 lists, but do not extend beyond the max length
static Point3D[]	ArraysI.sortMerge(Point3D[] A, Point3D[] B) merge such that result may be longer than either inputs
static Point3D[]	ImgProc.statsCorrelation(int[][][] pixels, float[][][][] kernels, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(int[][][] pixels, float[][][] kernel, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(short[][][] pixels, float[][][][] kernels, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(short[][][] pixels, float[][][] kernel, Point3D[] cands)
static Point3D[]	ArraysI.subArray(Point3D[] A, int offset, int newwidth)
Point3D	Image3Dinfo.transformPixelToScannerCoords(Point3D refPixelLoc)
Point3D	HeartLongAxis.transformToHeartCoords(Point3D refScannerLoc)
static Point3D	MathII.Vcross(Point2D A, Point2D B)

Methods in woSource.math with parameters of type Point3D

Modifier and Type	Method and Description
float[]	HeartLongAxis.cart2prosph(Point3D pt)
void	Point4D.Copy(Point3D origpt)
void	Point3D.Copy(Point3D origpt)
static double	MathII.dot(Point3D a, Point3D b)
static Point3D[][]	ArraysI.extend(Point3D[][] A, int nextend1, int nextend2)
static Point3D[]	ArraysI.extend(Point3D[] A, int nextend)
static java.awt.Rectangle	ImgProc.getBoundingBox(Point3D[][] A)
static java.awt.Rectangle	ImgProc.getBoundingBox(Point3D[][] A, int buffer)
static Point3D[]	ArraysI.insert(Point3D[] A, Point3D newval, int loc)
static Point3D[]	ArraysI.insert(Point3D[] A, Point3D newval, int loc)
static float	ArraysI.max(Point3D[] A)
static float	ArraysI.max(Point3D[][] A)
static float	ArraysI.max(Point3D[][][] A)
static Point3D	ArraysI.maxpt(Point3D[] A)
static Point3D	ArraysI.maxpt(Point3D[] A, int x, int width)
static float	ArraysI.min(Point3D[] A)
static float	ArraysI.min(Point3D[][] A)
static float	ArraysI.min(Point3D[][][] A)
void	ArrayDisplay.overlayBox(Point3D[] points, int boxsize) WO created 12/23/2010 assumes each 3D point can be anywhere
void	ArrayDisplay.overlayBox(Point3D[] points, int boxsize, java.lang.String color)
void	ArrayDisplay.overlayPoints(Point3D[] points, int marksize) WO created 12/23/2010 assumes each 3D point can be anywhere
void	ArrayDisplay.overlayPoints(Point3D[] points, int marksize, java.lang.String color)
static float	MathII.plane_sep(Point3D testPt, float[] planePt1, float[] planePt2, float[] planePt3)
static double	MathII.Point_sep(Point3D p1, Point3D p2)
static void	ArraysI.print(Point3D[] A, int n, java.lang.String label)
static void	ArraysI.print(Point3D[] A, java.lang.String label)
static Point3D[]	ArraysI.read(Point3D[] A, java.lang.String label)
static Point3D[]	ArraysI.read(Point3D[] A, java.lang.String label, boolean ask)
static Point3D[]	ArraysI.remove(Point3D[] A, int loc)
static float	MathII.sep(float[] p1, Point3D p2)
float	Point4D.sep(Point3D origpt)
float	Point3D.sep(Point3D origpt)
static float	MathII.sep(Point3D p2, float[] p1)
void	HeartLongAxis.setFocalPts(Point3D AP, Point3D MV)
void	HeartLongAxis.setLVapex(Point3D lvapex)
void	HeartLongAxis.setMidSeptumPt(Point3D msPt)
void	HeartLongAxis.setMVcentroid(Point3D MVcen)
void	ArrayDisplay.setPixels(Point3D[][] vals)
void	ArrayDisplay.setPixels(Point3D[][][] points)
static void	ArraysI.sort(Point3D[] A)
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D newval)
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D newval)
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D[] B) WO 12/23/2010 merge 2 lists, but do not extend beyond the max length
static Point3D[]	ArraysI.sortInsert(Point3D[] A, Point3D[] B) WO 12/23/2010 merge 2 lists, but do not extend beyond the max length
static Point3D[]	ArraysI.sortMerge(Point3D[] A, Point3D[] B) merge such that result may be longer than either inputs
static Point3D[]	ArraysI.sortMerge(Point3D[] A, Point3D[] B) merge such that result may be longer than either inputs
static Point3D[]	ImgProc.statsCorrelation(int[][][] pixels, float[][][][] kernels, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(int[][][] pixels, float[][][] kernel, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(short[][][] pixels, float[][][][] kernels, Point3D[] cands)
static Point3D[]	ImgProc.statsCorrelation(short[][][] pixels, float[][][] kernel, Point3D[] cands)
static Point3D[]	ArraysI.subArray(Point3D[] A, int offset, int newwidth)
Point3D	Image3Dinfo.transformPixelToScannerCoords(Point3D refPixelLoc)
Point3D	HeartLongAxis.transformToHeartCoords(Point3D refScannerLoc)
void	Point3D.Vcross(Point3D A, Point3D B)
static void	MathII.vnorm(Point3D a)
static void	ArraysI.write(Point3D[][][] A, java.lang.String label)
static void	ArraysI.write(Point3D[][] A, java.lang.String label)
static void	ArraysI.write(Point3D[] A, int n, java.lang.String label)
static void	ArraysI.write(Point3D[] A, int n, java.lang.String label, boolean ask)
static void	ArraysI.write(Point3D[] A, java.lang.String label)

Constructors in woSource.math with parameters of type Point3D

Constructor and Description
ArrayDisplay(Point3D[][][] points, java.lang.String label)
ArrayDisplay(Point3D[][][] vals, java.lang.String[] labels, int sliderdim)
ArrayDisplay(Point3D[][][] vals, java.lang.String[] labels, int sliderdim, java.util.Properties[] props)
ArrayDisplay(Point3D[][][] vals, java.lang.String[] labels, int sliderdim, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][][] points, java.lang.String label, int sliderdim)
ArrayDisplay(Point3D[][][] vals, java.lang.String label, int sliderdim, java.util.Properties[] props)
ArrayDisplay(Point3D[][][] vals, java.lang.String label, int sliderdim, java.util.Properties[] props, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][][] points, java.lang.String label, int sliderdim, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][][] points, java.lang.String label, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][][] vals, java.lang.String windowLabel, java.lang.String[] labels, int sliderdim, java.util.Properties[] props, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][] points, java.lang.String label)
ArrayDisplay(Point3D[][] vals, java.lang.String label, java.util.Properties props)
ArrayDisplay(Point3D[][] points, java.lang.String label, ScreenSelectorClass fpc)
ArrayDisplay(Point3D[][] vals, java.lang.String winlabel, java.lang.String sllabel, java.util.Properties props, ScreenSelectorClass fpc)
HeartLongAxis(java.lang.String label, Point3D LVapexPt, Point3D MVpt)
HeartLongAxis(java.lang.String label, Point3D LVapexPt, Point3D MVpt, Point3D SeptumPt)
Point3D(Point3D origpt)
Point4D(Point3D origpt)
Point4D(Point3D A, float tt, java.lang.String name)
Polygon3D(Point3D[] pts)
Polygon3D(Point3D[] pts, int offset)
Polygon3D(Point3D[] pts, int offset, int npts)