Point3Dviewer (WOImageJ API)

java.lang.Object
- woSource.ScreenSelectorClass
- - woSource.Point3Dviewer

All Implemented Interfaces:

ij.plugin.PlugIn, java.lang.Runnable
```
public class Point3Dviewer
extends ScreenSelectorClass
implements ij.plugin.PlugIn, java.lang.Runnable
```
WO 9/5/2014 implements a user-interactive viewer for 3D points. based on my MIPSviewer. Assumes that the points being passed in are 3D mm.
This permits one to display points submitted as a 3D array of short, int, or float.
1. The object can be rotated in any direction using a mouse-drag (hold left button down while "dragging in the direction of rotation and while the HAND icon is selected on the ImageJ toolbar).
2. The object can be rotated hands-free (continuously, without input = spinning) by 'throwing' "the mouse cursor (release the mouse button while dragging in the desired direction). To stop "the automatic rotation, click the mouse anywhere on the window or hit the space bar.
3. Clipping permitted as a % of total viewing depth, where max depth is when viewing dataset "from the side or from the top (phi or theta = 90 degrees).
4. A movie (AVI) can be created by getting the object in continuous motion in the "desired direction and hitting the AVI button.
The projection calculation is done in real-time. Large datasets may need to be cropped or resized (Toolbar->Image->Scale) beforehand to speed up the interaction.\n\n"); Details of implementation: 1. this is an extension of the screenSelectorClass (and not SScanvas). Events are handled by the SScanvas and SScanvas then may invoke these SSclass functions secondarily. Some potentially needed code modifications: 1. I hold all the data in a single 6D array, this forces the same number of array elements (e.g. same # of slices/set, same #pts/contour) which is wasteful.

See Also:

MIPSviewer, MIPSviewerColor

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

protected class Point3Dviewer.Updater

Nested Classes
Modifier and Type	Class and Description
`protected class`	`Point3Dviewer.Updater`

Field Summary

Fields
Modifier and Type	Field and Description
`protected GenericRecallableDialog`	`gd`
`protected HeartSegm`	`heartSegmentor`
`int`	`imgHeight`
`int`	`imgWidth`
`protected int`	`pointDisplaySize`
`protected static ScreenSelectorCanvas`	`this_canvas`
`protected Point3Dviewer.Updater`	`updater`
`protected ArrayDisplay`	`view3DAd`

Constructor Summary

Constructors
Constructor and Description
`Point3Dviewer()`
`Point3Dviewer(float[][] A)`
`Point3Dviewer(float[][][] A)`
`Point3Dviewer(float[][][][] A)`
`Point3Dviewer(float[][][][][][] A)`
`Point3Dviewer(HeartSegm HS)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addLandmark(float[] newlm)`
`void`	`addLandmark(Point3D newlmpt)`
`void`	`destroy()`
`void`	`drawOnArrayDisplay()`
`int`	`getAdScreenHeight()`
`int`	`getGdScreenHeight()`
`protected void`	`getInitView()`
`protected ij.gui.Roi`	`getRoi()`
`void`	`hide()`
`void`	`mouseDragged(java.awt.event.MouseEvent e)`
`void`	`mouseMoved(java.awt.event.MouseEvent e)`
`void`	`mousePressed(java.awt.event.MouseEvent e)`
`void`	`mouseReleased(java.awt.event.MouseEvent e)`
`void`	`refreshGD()`
`void`	`resetLandmark(int lmat, float[] newlm)`
`void`	`resetLandmark(int lmat, Point3D newlmpt)`
`void`	`resetView()`
`void`	`run()`
`void`	`run(java.lang.String arg)` This method is called when the plugin is loaded.
`void`	`runGUI()`
`void`	`saveImage(java.lang.String type)`
`void`	`setAdMagnification(float mag)`
`void`	`setAdScreenLocation(int x, int y)`
`void`	`setGdLocation(int x, int y)`
`void`	`setup(float[][] A)`
`void`	`setup(float[][][] A)`
`void`	`setup(float[][][][] A)`
`void`	`setup(float[][][][][][] A)`
`void`	`setup(HeartSegm HS)`
`void`	`setWindowScale()`
`void`	`show()`
`void`	`toFront()`
`void`	`transformConPoints(float[][] rotmtx, float shiftX, float shiftY, float shiftZ)`
`void`	`updateConCoords(int curSeries, int curSlice, int curEndoEpi, int snakeTime, int npts, float[][] newpts)`
`void`	`updateCumRot(float thetaincr, float phiincr)`
`void`	`updateCumRot(float theta, float phi, float psi)`
`void`	`updatePt3Dview()`
`void`	`updatePtCoords(float[][] A)`
`void`	`updatePtCoords(float[][][] A)`
`void`	`UpdateScreen()`
`void`	`UpdateSelection(int a, int b, java.lang.String keytype)`
`void`	`winLevel()`
`void`	`zoomIn()`

Methods inherited from class woSource.ScreenSelectorClass
keyPressed

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

gd
```
protected GenericRecallableDialog gd
```

imgWidth
```
public int imgWidth
```

imgHeight
```
public int imgHeight
```

pointDisplaySize
```
protected int pointDisplaySize
```

view3DAd
```
protected ArrayDisplay view3DAd
```

this_canvas

protected static ScreenSelectorCanvas this_canvas

updater

protected Point3Dviewer.Updater updater

heartSegmentor
```
protected HeartSegm heartSegmentor
```

Constructor Detail

Point3Dviewer
```
public Point3Dviewer()
```

Point3Dviewer
```
public Point3Dviewer(float[][] A)
```

Point3Dviewer
```
public Point3Dviewer(float[][][] A)
```

Point3Dviewer
```
public Point3Dviewer(float[][][][] A)
```

Point3Dviewer

public Point3Dviewer(float[][][][][][] A)

Point3Dviewer
```
public Point3Dviewer(HeartSegm HS)
```

Method Detail

setup
```
public void setup(HeartSegm HS)
```

setup
```
public void setup(float[][] A)
```

setup
```
public void setup(float[][][] A)
```

setup
```
public void setup(float[][][][] A)
```

setup

public void setup(float[][][][][][] A)

setWindowScale
```
public void setWindowScale()
```

run
```
public void run(java.lang.String arg)
```
Description copied from interface: ij.plugin.PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface ij.plugin.PlugIn

run
```
public void run()
```
Specified by:

run in interface java.lang.Runnable

runGUI
```
public void runGUI()
```

destroy
```
public void destroy()
```

saveImage

public void saveImage(java.lang.String type)

winLevel
```
public void winLevel()
```

getInitView
```
protected void getInitView()
```

drawOnArrayDisplay
```
public void drawOnArrayDisplay()
```

resetView
```
public void resetView()
```

refreshGD
```
public void refreshGD()
```

updatePtCoords

public void updatePtCoords(float[][] A)

updatePtCoords

public void updatePtCoords(float[][][] A)

updateConCoords

public void updateConCoords(int curSeries,
                            int curSlice,
                            int curEndoEpi,
                            int snakeTime,
                            int npts,
                            float[][] newpts)

updatePt3Dview
```
public void updatePt3Dview()
```

updateCumRot

public void updateCumRot(float thetaincr,
                         float phiincr)

updateCumRot

public void updateCumRot(float theta,
                         float phi,
                         float psi)

transformConPoints

public void transformConPoints(float[][] rotmtx,
                               float shiftX,
                               float shiftY,
                               float shiftZ)

addLandmark

public void addLandmark(Point3D newlmpt)

addLandmark

public void addLandmark(float[] newlm)

resetLandmark

public void resetLandmark(int lmat,
                          float[] newlm)

resetLandmark

public void resetLandmark(int lmat,
                          Point3D newlmpt)

zoomIn
```
public void zoomIn()
```

toFront
```
public void toFront()
```

hide
```
public void hide()
```

show
```
public void show()
```

UpdateScreen
```
public void UpdateScreen()
```
Overrides:

UpdateScreen in class ScreenSelectorClass

UpdateSelection

public void UpdateSelection(int a,
                            int b,
                            java.lang.String keytype)

Overrides:: UpdateSelection in class ScreenSelectorClass

mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent e)
```
Overrides:

mouseMoved in class ScreenSelectorClass

mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
Overrides:

mousePressed in class ScreenSelectorClass

mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
Overrides:

mouseReleased in class ScreenSelectorClass

mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
Overrides:

mouseDragged in class ScreenSelectorClass

getRoi
```
protected ij.gui.Roi getRoi()
```

setAdMagnification

public void setAdMagnification(float mag)

setAdScreenLocation

public void setAdScreenLocation(int x,
                                int y)

getAdScreenHeight
```
public int getAdScreenHeight()
```

setGdLocation

public void setGdLocation(int x,
                          int y)

getGdScreenHeight
```
public int getGdScreenHeight()
```

Class Point3Dviewer

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class woSource.ScreenSelectorClass

Methods inherited from class java.lang.Object

Field Detail

gd

imgWidth

imgHeight

pointDisplaySize

view3DAd

this_canvas

updater

heartSegmentor

Constructor Detail

Point3Dviewer

Point3Dviewer

Point3Dviewer

Point3Dviewer

Point3Dviewer

Point3Dviewer

Method Detail

setup

setup

setup

setup

setup

setWindowScale

run

run

runGUI

destroy

saveImage

winLevel

getInitView

drawOnArrayDisplay

resetView

refreshGD

updatePtCoords

updatePtCoords

updateConCoords

updatePt3Dview

updateCumRot

updateCumRot

transformConPoints

addLandmark

addLandmark

resetLandmark

resetLandmark

zoomIn

toFront

hide

show

UpdateScreen

UpdateSelection

mouseMoved

mousePressed

mouseReleased

mouseDragged

getRoi

setAdMagnification

setAdScreenLocation

getAdScreenHeight

setGdLocation

getGdScreenHeight