woSource

Class DVHCalc

java.lang.Object

ij.ImagePlus

woSource.DVHCalc

All Implemented Interfaces:

ij.measure.Measurements, ij.plugin.PlugIn, java.awt.image.ImageObserver

public class DVHCalc
extends ij.ImagePlus
implements ij.plugin.PlugIn

Field Summary

Fields inherited from class ij.ImagePlus

changes, CLOSED, COLOR_256, COLOR_RGB, compositeImage, currentSlice, GRAY16, GRAY32, GRAY8, height, img, ip, locked, OPENED, roi, stack, UPDATED, width, win

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface ij.measure.Measurements

AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV

Constructor Summary

Constructors

Constructor and Description
DVHCalc(float[] dose_depths, float[] dose_widths, float[] dose_heights, float[][][] dose_values, ArrayDisplay ad)

Method Summary

Modifier and Type	Method and Description
void	computeCircularContour()
void	computeDVH()
void	computeSphericalContour()
void	DrawContour(java.awt.Graphics cur_gr, ij.gui.ImageCanvas cur_ic, int con_at)
void	DrawContour(java.awt.Graphics cur_gr, ij.gui.ImageCanvas cur_ic, int con_at, float TLx, float TLy, float BRx, float BRy, int width, int height)
void	DrawNearestContour(java.awt.Graphics cur_gr, ij.gui.ImageCanvas cur_ic, float ZCoord, float TLx, float TLy, float BRx, float BRy, int width, int height)
int	fillAContour(java.awt.Graphics cur_gr, ij.gui.ImageCanvas cur_ic, int con_at, float TLx, float TLy, float BRx, float BRy, int width, int height)
void	fillContour(java.awt.Graphics cur_gr, ij.gui.ImageCanvas cur_ic, float ZCoord, float TLx, float TLy, float BRx, float BRy, int width, int height)
Point3D[]	ReadASnakeFile(java.lang.String filename)
boolean	ReadFirstSliceInfo()
boolean	ReadSnakeFiles()
void	run(java.lang.String arg) This method is called when the plugin is loaded.
void	showAbout()
void	subtractTumorFromLung()

Methods inherited from class ij.ImagePlus

addImageListener, close, copy, copyProperties, copyScale, createEmptyStack, createHyperStack, createImagePlus, createLut, createNewRoi, draw, draw, flatten, flush, getBitDepth, getBufferedImage, getBytesPerPixel, getCalibration, getCanvas, getChannel, getChannelProcessor, getClipboard, getCurrentSlice, getDimensions, getDisplayRangeMax, getDisplayRangeMin, getFileInfo, getFrame, getGlobalCalibration, getHeight, getHideOverlay, getID, getImage, getImageStack, getImageStackSize, getLocalCalibration, getLocationAsString, getLuts, getMask, getNChannels, getNDimensions, getNFrames, getNSlices, getOpenAsHyperStack, getOriginalFileInfo, getOverlay, getPixel, getProcessor, getProperties, getProperty, getRoi, getShortTitle, getSlice, getSliceLabels, getStack, getStackIndex, getStackSize, getStartTime, getStatistics, getStatistics, getStatistics, getStatistics, getTitle, getType, getWidth, getWindow, hide, imageUpdate, isComposite, isDisplayedHyperStack, isHyperStack, isInvertedLut, isLocked, isProcessor, isVisible, killRoi, killStack, lock, lockSilently, mouseMoved, notifyListeners, paste, removeImageListener, repaintWindow, resetClipboard, resetDisplayRange, resetStack, restoreRoi, revert, saveRoi, setActivated, setCalibration, setColor, setDimensions, setDisplayRange, setDisplayRange, setFileInfo, setGlobalCalibration, setHideOverlay, setIgnoreFlush, setImage, setOpenAsHyperStack, setOverlay, setOverlay, setOverlay, setPosition, setPosition, setPositionWithoutUpdate, setProcessor, setProcessor, setProperty, setRoi, setRoi, setRoi, setRoi, setSlice, setSliceWithoutUpdate, setStack, setStack, setStack, setTitle, setType, setWindow, show, show, startTiming, toString, trimProcessor, unlock, updateAndDraw, updateAndRepaintWindow, updateChannelAndDraw, updateImage, updatePosition, updateStatusbarValue

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DVHCalc

public DVHCalc(float[] dose_depths,
               float[] dose_widths,
               float[] dose_heights,
               float[][][] dose_values,
               ArrayDisplay ad)

Method Detail

run

public void run(java.lang.String arg)

Description copied from interface: ij.plugin.PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface ij.plugin.PlugIn

computeDVH

public void computeDVH()

computeCircularContour

public void computeCircularContour()

computeSphericalContour

public void computeSphericalContour()

ReadFirstSliceInfo

public boolean ReadFirstSliceInfo()

ReadSnakeFiles

public boolean ReadSnakeFiles()

ReadASnakeFile

public Point3D[] ReadASnakeFile(java.lang.String filename)

subtractTumorFromLung

public void subtractTumorFromLung()

fillContour

public void fillContour(java.awt.Graphics cur_gr,
                        ij.gui.ImageCanvas cur_ic,
                        float ZCoord,
                        float TLx,
                        float TLy,
                        float BRx,
                        float BRy,
                        int width,
                        int height)

fillAContour

public int fillAContour(java.awt.Graphics cur_gr,
                        ij.gui.ImageCanvas cur_ic,
                        int con_at,
                        float TLx,
                        float TLy,
                        float BRx,
                        float BRy,
                        int width,
                        int height)

DrawNearestContour

public void DrawNearestContour(java.awt.Graphics cur_gr,
                               ij.gui.ImageCanvas cur_ic,
                               float ZCoord,
                               float TLx,
                               float TLy,
                               float BRx,
                               float BRy,
                               int width,
                               int height)

DrawContour

public void DrawContour(java.awt.Graphics cur_gr,
                        ij.gui.ImageCanvas cur_ic,
                        int con_at,
                        float TLx,
                        float TLy,
                        float BRx,
                        float BRy,
                        int width,
                        int height)

DrawContour

public void DrawContour(java.awt.Graphics cur_gr,
                        ij.gui.ImageCanvas cur_ic,
                        int con_at)

showAbout

public void showAbout()