public class DTIanalysis
extends java.lang.Object
implements ij.plugin.PlugIn
Constructor and Description |
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DTIanalysis() |
Modifier and Type | Method and Description |
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void |
calcFAs() |
void |
computeDTs() |
void |
maskBadBaselineVals() |
int |
population(int i,
int j,
int k,
int order) |
int[] |
populationBasis(int i,
int order,
int[] tally)
function ret=populationBasis(i,order,c)
if order==0
ret=c;
else
j=mod(i,3);
c(j+1)=c(j+1)+1;
ret=populationBasis((i-j)/3,order-1,c);
end
|
void |
preProcessDiffImages() |
void |
readDiffImages() |
boolean |
readT1s() |
void |
registerT1toT2() |
void |
run(java.lang.String arg)
This method is called when the plugin is loaded.
|
boolean |
segBrain() |
boolean |
segTumor() |
void |
setGradDirs(int ndirs,
java.lang.String manufact) |
double[][] |
setUnitVecs() |
void |
showAbout() |
public void showAbout()
public void run(java.lang.String arg)
ij.plugin.PlugIn
run
in interface ij.plugin.PlugIn
public void maskBadBaselineVals()
public boolean segBrain()
public boolean readT1s()
public void registerT1toT2()
public boolean segTumor()
public void computeDTs()
public void calcFAs()
public int population(int i, int j, int k, int order)
public int[] populationBasis(int i, int order, int[] tally)
public void preProcessDiffImages()
public void readDiffImages()
public void setGradDirs(int ndirs, java.lang.String manufact)
public double[][] setUnitVecs()