woSource

Class DoseVsIntensity

java.lang.Object

woSource.DoseVsIntensity

All Implemented Interfaces:

ij.plugin.PlugIn

public class DoseVsIntensity
extends java.lang.Object
implements ij.plugin.PlugIn

Constructor Summary

Constructors

Constructor and Description
DoseVsIntensity()

Method Summary

Modifier and Type	Method and Description
void	cleanGlobalMask()
void	computeDoseResponse(int sliceAt)
Rectangle3D	getDefDoseBoundingRect()
short[][][]	GetLungVolRect_Mask(short[][][] img, java.lang.String comment)
float[][][]	invTransDoseField() want to warp the second image voxels and if the voxel center lands within the dose region, then find and record the closest dose sample.
void	reg2DoseVolume()
void	run(java.lang.String arg) This method is called when the plugin is loaded.
void	showAbout()
void	spaceWindowsOnScreen()
float[][][]	subsampleDoseField() WO seems to work properly 2/07 For display -- create a dose array that matches spatially the orig image voxels, for overlay display.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DoseVsIntensity

public DoseVsIntensity()

Method Detail

run

public void run(java.lang.String arg)

Description copied from interface: ij.plugin.PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface ij.plugin.PlugIn

spaceWindowsOnScreen

public void spaceWindowsOnScreen()

showAbout

public void showAbout()

computeDoseResponse

public void computeDoseResponse(int sliceAt)

GetLungVolRect_Mask

public short[][][] GetLungVolRect_Mask(short[][][] img,
                                       java.lang.String comment)

cleanGlobalMask

public void cleanGlobalMask()

reg2DoseVolume

public void reg2DoseVolume()

invTransDoseField

public float[][][] invTransDoseField()

want to warp the second image voxels and if the voxel center lands within the dose region, then find and record the closest dose sample. Returns an image the same size as the second image where each voxel is the dose at the dose sample that most closely matches the deformed location of the 2nd image voxels.
This code is not terribly efficient, but is not used often. Probably could be sped up by creating a new version of transformImage_mm that uses a passed-in computatonROI that does not recompute image top left and unit vectors for each point.

getDefDoseBoundingRect

public Rectangle3D getDefDoseBoundingRect()

subsampleDoseField

public float[][][] subsampleDoseField()

WO seems to work properly 2/07
For display -- create a dose array that matches spatially the orig image voxels, for overlay display. need voxel locations for dose field -- doses do not need to match CT image voxel sizes.
Designed to handle oversampled dose field. But 10/9/2012 seems to assume that the dose array is in the same orientation (not registration-transformed) as the planning CT, thus cannot be applied to the follow-up CT as well.
Assumes doseRect_Px has been set already via call to dosereader.convDose2CTscannerCoords()