public class noduleDetection extends ImageReviewer implements ij.plugin.PlugIn
Modifier and Type | Class and Description |
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class |
noduleDetection.lungSnake
WO 9/23/2013 this whole part needs to be recoded to use humanLungSegm
|
class |
noduleDetection.myThread |
working_canvas
Constructor and Description |
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noduleDetection() |
Modifier and Type | Method and Description |
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void |
applyTemplates() |
void |
calcAllLIDCfirstPass() |
void |
calcAllLIDCmasks() |
float[][][][] |
calcKall(float radius,
float wpadding,
float dscale,
float wscale,
float hscale) |
float[][][][] |
calcKall(float radius,
float wpadding,
float dscale,
float wscale,
float hscale,
float shiftd,
float shiftw,
float shifth) |
void |
customButFunction() |
void |
doManualLungSeg() |
void |
doNCCCopt(java.lang.String optType) |
java.lang.String |
getImageJOutputDir() |
void |
getLungMask(boolean readInJPGs) |
void |
NCCCoptLoc(int candStart,
int candEnd) |
void |
NCCCoptPadding(int candStart,
int candEnd) |
void |
NCCCoptRadii(int candStart,
int candEnd,
int iter) |
protected void |
redisplay() |
protected NoduleCandidate[] |
rmRedundantPts(NoduleCandidate[] A,
float sepThresh,
float xscale) |
void |
run(java.lang.String arg)
This method is called when the plugin is loaded.
|
adjustCurSlice, cropToObjectROI, customButFunc, customChoiceFunc, findClosestMark, get3Dview, get3DviewOfmark, getObjectMaskFromFiles, getObjectMaskFromFiles, getPtInputDirInfo, resetwidgets, run, runGUI, setGUIWinLevelWidgets, setNewSlice, setNewStudy, setupImg, setupImg, setupImg, setupImg, spaceWindowsOnScreen, toString, updateMarkingPanel, UpdateScreen, UpdateSelection, UpdateSelectionImageReviewer
keyPressed, mouseDragged, mouseMoved, mousePressed, mouseReleased
public void run(java.lang.String arg)
ij.plugin.PlugIn
run
in interface ij.plugin.PlugIn
run
in class ImageReviewer
public void customButFunction()
public void applyTemplates()
public void NCCCoptRadii(int candStart, int candEnd, int iter)
public void doNCCCopt(java.lang.String optType)
public void NCCCoptLoc(int candStart, int candEnd)
public void NCCCoptPadding(int candStart, int candEnd)
protected void redisplay()
redisplay
in class ImageReviewer
protected NoduleCandidate[] rmRedundantPts(NoduleCandidate[] A, float sepThresh, float xscale)
public float[][][][] calcKall(float radius, float wpadding, float dscale, float wscale, float hscale)
public float[][][][] calcKall(float radius, float wpadding, float dscale, float wscale, float hscale, float shiftd, float shiftw, float shifth)
public void getLungMask(boolean readInJPGs)
public void doManualLungSeg()
public java.lang.String getImageJOutputDir()
public void calcAllLIDCmasks()
public void calcAllLIDCfirstPass()