woSource.math

Class ArrayColorDisplay3D

java.lang.Object

woSource.math.ArrayDisplay

woSource.math.ArrayColorDisplay

woSource.math.ArrayColorDisplay3D

public class ArrayColorDisplay3D
extends ArrayColorDisplay

ACD3D handles having 3 windows open simultaneously and cooperatively. It is intented for use with 3D image registration to faciliate looking at all 3 views while manipulating shifts and rotations in 3D.

It is meant to invoked like a regular ArrayDisplay and the handling of all 3 windows in done automatically.

1/2/09 redid this to match need to have isotropic dataset as input, rather than just creating an isotropic set for display here.

Field Summary

Fields inherited from class woSource.math.ArrayDisplay

alpha, booleanImage, Depth, DEPTH, hasNoImage, Height, HEIGHT, isByte, isDouble, isFloat, isInt, isPoint3D, isShort, Label, maxval, minval, mmPerPixelX, mmPerPixelY, onlyOneImage, showing3D, sliceCenterSep, SliceLabel, SliceLabels, sliceprops, SliderDim, ssc, stackprops, Width, WIDTH, working_canvas, working_display, working_frame, working_graphics, working_ip, working_ip_stack, working_stack, working_window, X, Y, Z

Constructor Summary

Constructors

Constructor and Description
ArrayColorDisplay3D(byte[][][] vals, java.lang.String label)
ArrayColorDisplay3D(byte[][][] vals, java.lang.String label, java.util.Properties[] props)
ArrayColorDisplay3D(byte[][][] vals, java.lang.String label, java.util.Properties[] props, Rectangle3D curroi)
ArrayColorDisplay3D(byte[][][] vals, java.lang.String label, java.util.Properties[] props, Rectangle3D curroi, int stretchdw, int stretchdh)
ArrayColorDisplay3D(short[][][] vals, java.lang.String label)
ArrayColorDisplay3D(short[][][] vals, java.lang.String label, java.util.Properties[] props)
ArrayColorDisplay3D(short[][][] vals, java.lang.String label, java.util.Properties[] props, Rectangle3D curroi)
ArrayColorDisplay3D(short[][][] vals, java.lang.String label, java.util.Properties[] props, Rectangle3D curroi, int stretchdw, int stretchdh)

Method Summary

Modifier and Type	Method and Description
void	destroy() remove the window and clear arrays
java.awt.Dimension	getSideViewScreenSize()
java.awt.Dimension	getTopViewScreenSize()
void	ImageOverlay(short[][][] img2)
void	ImageOverlay(short[][][] img2, int dshift, int wshift, int hshift)
void	ImageOverlay(short[][][] img2, java.util.Properties[] props2, Rectangle3D roi2, float dshift, float wshift, float hshift, float drot, float wrot, float hrot)
void	ImageOverlay(short[][][] img2, java.util.Properties[] props2, Rectangle3D roi2, float dshift, float wshift, float hshift, float drot, float wrot, float hrot, java.lang.String colorStr)
void	setOrthoViews(short[][][] img2)
void	setSideViewScreenLocation(int topleftx, int toplefty)
void	setTopViewScreenLocation(int topleftx, int toplefty)

Methods inherited from class woSource.math.ArrayColorDisplay

getRGBs, getRGBs, ImageGradientOverlay, ImageGradientOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, setColors, setColors, setColors, setColors, setPixels, setPixels, setPixels, setPixels, setPixels, setPixels, setPixels, setPixels, setRGBs, setRGBs

Methods inherited from class woSource.math.ArrayDisplay

autoWindowLevel, clearOverlays, Duplicate, getAlpha, getColor, getCurrentSlice, getCurrentSliceNumber, getCurrentSliceZ, getCursorLoc, getDepth, getGraphics, getHeight, getImageCanvas, getImagePlus, getImageProcessor, getImageProcessor, getImageProcessorStack, getImageStack, getIPStack, getLabel, getMagnification, getmmPerPixelX, getmmPerPixelY, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getPixels, getProperties, getProperty, getRoi, getRoi, getRoi, getRoi, getRoi, getScreenLocation, getScreenSize, getSliceCenterSep, getSliceLabel, getSliceLabels, getSliceZ, getStackSize, getStackWindow, getWidth, hasFocus, hide, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, ImageOverlay, invertLUT, isVisible, killRoi, loopThroughSlices, loopThroughSlices, MaskPixelsOverlay, overlay3Ddisk, overlayArrow, overlayArrow, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayBox, overlayCircle, overlayCircle, overlayCircle, overlayCircle, overlayCircle, overlayCircle, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayDiamond, overlayLine, overlayLine, overlayLine, overlayLine, overlayLine, overlayLine, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayLines, overlayPoint, overlayPoint, overlayPoint, overlayPoint, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlayPoints, overlaySmoothedPolygon, overlayText, overlayText, overlayText, overlayText, overlayVectors, overlayVectors, refresh, refreshImage, rotateImage, saveAsAnimatedGif, saveAsAnimatedGif, saveAsAVI, saveAsAVI, saveAsImage, saveAsImage, saveAsImages, saveAsImages, setAlpha, setBackgroundColor, setBackgroundColor, setCurrentSlice, setFileInfo, setFullScreen, setMagnification, setmmPerPixelX, setmmPerPixelY, setPixels, setPixels, setPixels, setPixels, setPixels, setPixels, setProperty, setRoi, setRoi, setRoi, setRoi, setRoi, setRoi, setRoiFillColor, setScreenLocation, setScreenLocation, setScreenSize, setSliceCenterSep, setSliceLabel, setSliceLabels, setupPropsLabelsEtc, setWindowLevel, show, toBack, toFront, toString, turnOffListeners, turnOnListeners, unhide, validate, zoomIn, zoomOut, zoomToRoi, zoomToRoi, zoomToRoi

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ArrayColorDisplay3D

public ArrayColorDisplay3D(byte[][][] vals,
                           java.lang.String label)

ArrayColorDisplay3D

public ArrayColorDisplay3D(byte[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props)

ArrayColorDisplay3D

public ArrayColorDisplay3D(byte[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props,
                           Rectangle3D curroi)

ArrayColorDisplay3D

public ArrayColorDisplay3D(byte[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props,
                           Rectangle3D curroi,
                           int stretchdw,
                           int stretchdh)

ArrayColorDisplay3D

public ArrayColorDisplay3D(short[][][] vals,
                           java.lang.String label)

ArrayColorDisplay3D

public ArrayColorDisplay3D(short[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props)

ArrayColorDisplay3D

public ArrayColorDisplay3D(short[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props,
                           Rectangle3D curroi)

ArrayColorDisplay3D

public ArrayColorDisplay3D(short[][][] vals,
                           java.lang.String label,
                           java.util.Properties[] props,
                           Rectangle3D curroi,
                           int stretchdw,
                           int stretchdh)

Method Detail

ImageOverlay

public void ImageOverlay(short[][][] img2,
                         int dshift,
                         int wshift,
                         int hshift)

Overrides:

ImageOverlay in class ArrayColorDisplay

ImageOverlay

public void ImageOverlay(short[][][] img2,
                         java.util.Properties[] props2,
                         Rectangle3D roi2,
                         float dshift,
                         float wshift,
                         float hshift,
                         float drot,
                         float wrot,
                         float hrot)

ImageOverlay

public void ImageOverlay(short[][][] img2,
                         java.util.Properties[] props2,
                         Rectangle3D roi2,
                         float dshift,
                         float wshift,
                         float hshift,
                         float drot,
                         float wrot,
                         float hrot,
                         java.lang.String colorStr)

ImageOverlay

public void ImageOverlay(short[][][] img2)

Overrides:

ImageOverlay in class ArrayColorDisplay

setOrthoViews

public void setOrthoViews(short[][][] img2)

setTopViewScreenLocation

public void setTopViewScreenLocation(int topleftx,
                                     int toplefty)

getTopViewScreenSize

public java.awt.Dimension getTopViewScreenSize()

setSideViewScreenLocation

public void setSideViewScreenLocation(int topleftx,
                                      int toplefty)

getSideViewScreenSize

public java.awt.Dimension getSideViewScreenSize()

destroy

public void destroy()

Description copied from class: ArrayDisplay

remove the window and clear arrays

Overrides:

destroy in class ArrayDisplay