woSource

Class RatImageAdjuster

java.lang.Object

woSource.ScreenSelectorClass

woSource.ImageReviewer

woSource.RatImageAdjuster

All Implemented Interfaces:

ij.plugin.PlugIn

public class RatImageAdjuster
extends ImageReviewer
implements ij.plugin.PlugIn

RatImageAdjuster by W. O'Dell 9/8/2015
Goal is to make easier the task of manually drawing ellipses or other ROIs to fill in where the contrast in the rat lung vessels has gaps.

Field Summary

Fields

Modifier and Type	Field and Description
protected int	imagemax
protected int	imagemin
protected boolean	imagesWereSaved
protected java.lang.String	name_ext
protected java.lang.String	outputdir
protected java.lang.String	slash
protected boolean	terminateOnFuncClose

Fields inherited from class woSource.ImageReviewer

working_canvas

Constructor Summary

Constructors

Constructor and Description
RatImageAdjuster()

Method Summary

Modifier and Type	Method and Description
protected void	cropToRect(Rectangle3D curRect)
void	customButFunc()
void	run(java.lang.String arg) This method is called when the plugin is loaded.
void	run(java.lang.String arg, ij.ImagePlus passedimp)
void	setupMIPs(byte[][][] A)
void	spaceWindowsOnScreen()
void	updateMIPs()

Methods inherited from class woSource.ImageReviewer

adjustCurSlice, cropToObjectROI, customChoiceFunc, findClosestMark, get3Dview, get3DviewOfmark, getObjectMaskFromFiles, getObjectMaskFromFiles, getPtInputDirInfo, redisplay, resetwidgets, runGUI, setGUIWinLevelWidgets, setNewSlice, setNewStudy, setupImg, setupImg, setupImg, setupImg, toString, updateMarkingPanel, UpdateScreen, UpdateSelection, UpdateSelectionImageReviewer

Methods inherited from class woSource.ScreenSelectorClass

keyPressed, mouseDragged, mouseMoved, mousePressed, mouseReleased

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

outputdir

protected java.lang.String outputdir

slash

protected java.lang.String slash

name_ext

protected java.lang.String name_ext

imagemax

protected int imagemax

imagemin

protected int imagemin

imagesWereSaved

protected boolean imagesWereSaved

terminateOnFuncClose

protected boolean terminateOnFuncClose

Constructor Detail

RatImageAdjuster

public RatImageAdjuster()

Method Detail

run

public void run(java.lang.String arg)

Description copied from interface: ij.plugin.PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface ij.plugin.PlugIn

Overrides:

run in class ImageReviewer

run

public void run(java.lang.String arg,
                ij.ImagePlus passedimp)

Overrides:

run in class ImageReviewer

customButFunc

public void customButFunc()

Overrides:

customButFunc in class ImageReviewer

spaceWindowsOnScreen

public void spaceWindowsOnScreen()

Overrides:

spaceWindowsOnScreen in class ImageReviewer

cropToRect

protected void cropToRect(Rectangle3D curRect)

setupMIPs

public void setupMIPs(byte[][][] A)

updateMIPs

public void updateMIPs()