woSource

Class MIPSviewerColor

java.lang.Object

woSource.ScreenSelectorClass

woSource.MIPSviewer

woSource.MIPSviewerColor

All Implemented Interfaces:

ij.plugin.PlugIn

public class MIPSviewerColor
extends MIPSviewer
implements ij.plugin.PlugIn

WO color version added 1/2013.
need to have either the thicknessRatio, or either the passedimp or props defined. byte[][][] colorlabels gives each pixel a color designation. Point4Dint[] ptlabels(x,y,z, t) is meant to give a number text label for selected pixels, intended to display branch numbers where color is different for each tree (given by 't' value).

See Also:

MIPSviewer

Nested Class Summary

Nested classes/interfaces inherited from class woSource.MIPSviewer

MIPSviewer.Updater

Field Summary

Fields inherited from class woSource.MIPSviewer

gd, MIPs_canvas, updater

Constructor Summary

Constructors

Constructor and Description
MIPSviewerColor()

Method Summary

Modifier and Type	Method and Description
void	destroy()
protected void	getInitView()
protected ij.gui.Roi	getRoi()
void	redisplay()
void	resetView()
void	run(java.lang.String arg) This method is called when the plugin is loaded.
void	saveImage(java.lang.String type)
void	setup(byte[][][] A, byte[][][] colorlabels)
void	setup(byte[][][] A, byte[][][] colorlabels, float sliceRatio)
void	setup(byte[][][] A, byte[][][] colorlabels, float sliceRatio, ij.ImagePlus passedimp)
void	setup(byte[][][] A, byte[][][] colorlabels, float sliceRatio, java.util.Properties[] props)
void	setup(byte[][][] A, byte[][][] colorlabels, ij.ImagePlus passedimp)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, ij.ImagePlus passedimp)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, ij.ImagePlus passedimp, java.util.Properties[] props)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, java.util.Properties[] props)
void	setup(byte[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, ij.ImagePlus passedimp)
void	setup(short[][][] A, byte[][][] colorlabels)
void	setup(short[][][] A, byte[][][] colorlabels, float sliceRatio)
void	setup(short[][][] A, byte[][][] colorlabels, float sliceRatio, ij.ImagePlus passedimp)
void	setup(short[][][] A, byte[][][] colorlabels, float sliceRatio, java.util.Properties[] props)
void	setup(short[][][] A, byte[][][] colorlabels, ij.ImagePlus passedimp)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, ij.ImagePlus passedimp)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, ij.ImagePlus passedimp, java.util.Properties[] props)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, float sliceRatio, java.util.Properties[] props)
void	setup(short[][][] A, byte[][][] colorlabels, Point4Dint[] ptlabels, ij.ImagePlus passedimp)
void	toBack()
void	toFront()
void	turnOffPtLabels()
void	turnONPtLabels()
void	winLevel()
void	zoomIn()
void	zoomOut()

Methods inherited from class woSource.MIPSviewer

getHeaderInfo, hideGUI, mouseDragged, mouseMoved, mousePressed, mouseReleased, runGUI, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setup, setupView, stop, UpdateSelection

Methods inherited from class woSource.ScreenSelectorClass

keyPressed, UpdateScreen

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MIPSviewerColor

public MIPSviewerColor()

Method Detail

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio,
                  java.util.Properties[] props)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  ij.ImagePlus passedimp)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  java.util.Properties[] props)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  ij.ImagePlus passedimp)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp)

setup

public void setup(byte[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp,
                  java.util.Properties[] props)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio,
                  java.util.Properties[] props)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  ij.ImagePlus passedimp)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  java.util.Properties[] props)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  ij.ImagePlus passedimp)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp)

setup

public void setup(short[][][] A,
                  byte[][][] colorlabels,
                  Point4Dint[] ptlabels,
                  float sliceRatio,
                  ij.ImagePlus passedimp,
                  java.util.Properties[] props)

run

public void run(java.lang.String arg)

Description copied from interface: ij.plugin.PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface ij.plugin.PlugIn

Overrides:

run in class MIPSviewer

saveImage

public void saveImage(java.lang.String type)

Overrides:

saveImage in class MIPSviewer

winLevel

public void winLevel()

Overrides:

winLevel in class MIPSviewer

getInitView

protected void getInitView()

Overrides:

getInitView in class MIPSviewer

resetView

public void resetView()

Overrides:

resetView in class MIPSviewer

getRoi

protected ij.gui.Roi getRoi()

Overrides:

getRoi in class MIPSviewer

zoomIn

public void zoomIn()

Overrides:

zoomIn in class MIPSviewer

zoomOut

public void zoomOut()

Overrides:

zoomOut in class MIPSviewer

toFront

public void toFront()

Overrides:

toFront in class MIPSviewer

toBack

public void toBack()

Overrides:

toBack in class MIPSviewer

turnOffPtLabels

public void turnOffPtLabels()

turnONPtLabels

public void turnONPtLabels()

destroy

public void destroy()

Overrides:

destroy in class MIPSviewer

redisplay

public void redisplay()

Overrides:

redisplay in class MIPSviewer